RNA-seq

Compendium

A compendium of the transcriptome of a small opportunistic human pathogen under infection-relevant conditions

Rieza Aprianto, Jelle Slager, Siger Holsappel and Jan-Willem Veening

Expression Value
rlog TPM log2TPM
Graph Height
200 400 600 800
Graph Width
600 800 1000 1200
Select Condition
NEP NT5 NT60 NTN N>>L LEP N>>B BEP B>>C N>>F FEP
F40 C>>N CEP C03 C10 C20 I00 I30 I60 I120 I240
Table Orientation
Wide Long
If none is selected ALL will be displayed
Color Scale

Examples
Selected Genes
Pneumococcal Genes
Remark




ConditionsDescription
NEPGrowth in nose-like medium
NT5Growth in nose-like medium, transmission 5 min
NT60Growth in nose-like medium, transmission 60 min
NTNGrowth in nose-like medium, trans. 5 min, to nose-like medium 5 min
N>>LGrowth in nose-like medium , in lung-like medium 5 min
LEPGrowth in lung-like medium
N>>BGrowth in nose-like medium, in blood-like medium 5 min
BEPGrowth in blood-like medium
B>>CGrowth in blood-like medium, in C+Y 5 min
N>>FGrowth in nose-like medium, in CSF-like medium 5 min
FEPGrowth in CSF-like medium
F40Growth in CSF-like medium, then 40℃ (fever-like) 5 min
C>>NGrowth in C+Y, in nose-like medium 5 min
CEPGrowth in C+Y
C03Growth in C+Y, CSP 3 min
C10Growth in C+Y, CSP 10 min
C20Growth in C+Y, CSP 20 min
I00Co-incubation with A549, 0 minutes post infection
I30Co-incubation with A549, 30 minutes post infection
I60Co-incubation with A549, 60 minutes post infection
I120Co-incubation with A549, 120 minutes post infection
I240Co-incubation with A549, 240 minutes post infection

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