RNA-seq

PneumoExpress: Expression Browser

High-resolution analysis of the pneumococcal transcriptome under a wide range of infection-relevant conditions
Rieza Aprianto, Jelle Slager, Siger Holsappel and Jan-Willem Veening
bioRxiv: https:/doi.org/10.1101/283739

 

Gene selection
Genes
-------OR
Examples

Infection-relevant conditions
Nose (NMC) Transm., 5 min Transm., 60 min Transm.>>NMC NMC>>LMC Lung (LMC) NMC>>BMC Blood (BMC)
BMC>>C+Y NMC>>CSFMC CSF (CSFMC) Fever C+Y>>NMC C+Y CSP, 3 min CSP, 10 min
CSP, 20 min Infect, 0 mpi Infect, 30 mpi Infect, 60 mpi Infect, 120 mpi Infect, 240 mpi
If none is selected ALL will be displayed.
Scroll down to see description of the conditions.

Expression Value
TPM log2(TPM) rlog CenteredTPM
Graph Height
200 400 600 800
Graph Width
600 800 1000 1200
Table Orientation
Landscape Portrait
Color Scale




ConditionsDescription
Nose (NMC)Growing in nose-mimicking conditions
Transm., 5 minGrow in nose-mimicking, transmission 5 min
Transm., 60 minGrow in nose-mimicking, transmission 60 min
Transm.>>NMCGrow in nose-mimicking, trans. 5 min, to nose-mimicking conditions 5 min
NMC>>LMCGrow in nose-mimicking, in lung-mimicking conditions 5 min
Lung (LMC)Growing in lung-mimicking conditions
NMC>>BMCGrow in nose-mimicking, in blood-mimicking conditions 5 min
Blood (BMC)Growing in blood-mimicking conditions
BMC>>C+YGrow in blood-mimicking conditions, in C+Y 5 min
NMC>>CSFMCGrow in nose-mimicking, in CSF-mimicking conditions 5 min
CSF (CSFMC)Growing in CSF-mimicking conditions
FeverGrow in CSF-mimicking conditions, then 40℃C (fever-mimicking), 5 min
C+Y>>NMCGrow in C+Y, in nose-mimicking conditions 5 min
C+YGrowing in C+Y
CSP, 3 minGrow in C+Y, CSP 3 min
CSP, 10 minGrow in C+Y, CSP 10 min
CSP, 20 minGrow in C+Y, CSP 20 min
Infect, 0 mpiInfection to A549, 0 min post infection
Infect, 30 mpiInfection to A549, 30 min post infection
Infect, 60 mpiInfection to A549, 60 min post infection
Infect, 120 mpiInfection to A549, 120 min post infection
Infect, 240 mpiInfection to A549, 240 min post infection


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